lab_scripts
Standalone scripts used in the lab's various bioinformatics workflows
Updated 19 Sep 2022 by wbrazelton
Brazelton-2022-Lost-City-fluids-MAGs
Supplemental files associated with Brazelton et al. manuscript on Lost City fluids MAGs
Updated 13 Sep 2022 by wbrazelton
protocols
Updated 17 Nov 2021 by wbrazelton
McGonigle-2019-LCY
Genomic Evidence for Formate Metabolism by Chloroflexi as the Key to Unlocking Deep Carbon in Lost City Microbial Ecosystems
Updated 16 Nov 2021 by wbrazelton
Thornton_2020
Scripts and R-code used in Thornton et al., 2020
Updated 16 Nov 2021 by wbrazelton
bio_utils
Python package containing modules of commonly used bioinformatic scripts
Updated 16 Nov 2021 by wbrazelton
McGonigle-BSF-Metagenome-2021
Supplement for Metabolic Potential of Microbial Communities in the Hypersaline Sediments of the Bonneville Salt Flats
Updated 16 Nov 2021 by wbrazelton
seq-annot
Tools to facilitate annotation and comparison of genomes and metagenomes
Updated 5 Mar 2021 by wbrazelton
Atlantis-Massif-2015
Materials associated with Motamedi et al. (2019)
Updated 9 Dec 2019 by shahrzadmotamedi
seq-qc
Basic tools for preprocessing sequencing reads
Updated 1 Jul 2019 by cnthornton
oak
Ontological Annotation using Kegg
Updated 4 Nov 2017 by TheOneHyer
Dangerfield-2017
Protocols and software associated with Dangerfield et al. 2017 "Bacterial communities affected by experimental disturbances to canopy soils of a temperate rainforest"
Updated 14 Jul 2017 by wbrazelton